The Numpy library in Python comes with a number of useful functions and methods to work with and manipulate the data in arrays. In this tutorial, we will look at how to set all the zeros in a Numpy array to nan with the help of some examples.
Steps to set all the zeros to nan in Numpy
You can use boolean indexing to set all the zeros in a Numpy array to nan. The following is the syntax –
# set all zeros to nan ar[ar == 0] = np.nan
It replaces the occurrences of the value
0 in the array
ar with nan.
Let’s now look at a step-by-step example of using this syntax –
Step 1 – Create a Numpy array
First, we will create a Numpy array that we will use throughout this tutorial.
import numpy as np # create numpy array ar = np.array([-3, -2, -1, 0, 1, 2, 3, 0, 4, 5]) # display the array print(ar)
[-3 -2 -1 0 1 2 3 0 4 5]
Here, we used the
numpy.array() function to create a one-dimensional Numpy array containing some numbers. You can see that the array has both positive and negative values (along with some zeros).
Step 2 – Convert the array to float type
If the array contains only integer values, first convert them to float. This is because
np.nan is of
float type and if you try to fill a float value in an integer array, you’ll get an error.
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For example –
# set zeros to nan ar[ar == 0] = np.nan
--------------------------------------------------------------------------- ValueError Traceback (most recent call last) Input In , in <module> 1 # set zeros to nan ----> 2 ar[ar == 0] = np.nan ValueError: cannot convert float NaN to integer
Here we get an error because we’re setting the value inside an integer array with a float value.
Thus, first, convert the array to float type.
# convert to float ar = ar.astype('float') # display the array print(ar)
[-3. -2. -1. 0. 1. 2. 3. 0. 4. 5.]
Step 3 – Replace zeros with nan using boolean indexing
Using boolean indexing identify the values that are equal to zero and then set them to nan.
First, we will specify our boolean expression
ar == 0 (which finds the zero values in the array) and then set values satisfying this condition to nan.
# set zeros to nan ar[ar == 0] = np.nan # display the array print(ar)
[-3. -2. -1. nan 1. 2. 3. nan 4. 5.]
The resulting array has all the zeros replaced with nan.
To understand what’s happening here, let’s look under the hood. Let’s see what we get from the expression
ar == 0
# create a numpy array ar = np.array([-3, -2, -1, 0, 1, 2, 3, 0, 4, 5]) # result of boolean expression ar == 0 ar == 0
array([False, False, False, True, False, False, False, True, False, False])
We get a boolean array. The boolean values in this array represent whether a value at a particular index satisfies the given condition (in our case whether the element is equal to zero or not).
When we do
ar[ar == 0] = np.nan, we are essentially setting the values in the array where the condition evaluates to
You can similarly filter a Numpy array for other conditions as well.
Summary – Set zeros to nan in Numpy
In this tutorial, we looked at how to replace all the zeros in a Numpy array with nan. The following is a short summary of the steps mentioned –
- Create a Numpy array (skip this step if you already have an array to operate on).
- Convert the array to float type if all the values inside the array are integers.
- Use boolean indexing to find the zeros and then set them to nan –
ar[ar == 0] = np.nan
You might also be interested in –
- Numpy – Make All Negative Values Zero in Array
- Numpy Array – Get All Values Smaller than a Given Value
- Filter a Numpy Array – With Examples
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